Thursday, September 27, 2012

Guess the Genotype #88

So, I discovered today that a number of e-mails from y lovely readers were somehow lost in my inbox. I'm not sure how, but I swear I had never read some of them before. One of these e-mails is the source of today's Guess the Genotype. Can you guess this puppy's genotype? Its breed?

Image provided to me by Little Walken

Wednesday, September 26, 2012

Why Tortoiseshells are Tortoiseshells

Tortoiseshell cats display a wide range of markings
Most people who are familiar with cats know about tortoiseshells: those patchy, red and black kitties. Not necessarily as well known is the fact that virtually all tortoiseshells are female. Why is that?

Torti with lots of black
In domestic cats, the basic black and red pigment genes are actually located on the X chromosomes, and are thus sex-linked. Since cats are like us and their sex is determined by the X-Y system, males have only one X chromosome, while females have two of them. A lot of cats will have all chromosomes of the same type, which will lead to the cat having all red pigment or all black pigment. However, the genes are also basically co-dominant, which leads to both colors being expressed in females that have both a red X and a black X. However, things are a bit more complicated than that.

The exact mechanism behind a tortoiseshell's patch coat is actually quite fascinating. As with all X-Y animals, females don't necessarily benefit from having more than one copy of the X chromosome. The extra dose of genetic material can actually be problematic, so the body undergoes what it needs to for what is called dosage compensation. Basically, the body only wants to work with one chromosome at a time in each cell. Due to this, cells will undergo X-chromosome inactivation, packaging the material into a tiny bundle that is not usable. This little bundle is known as a Barr body.

A cell nucleus with a Barr body. Xi is the inactive chromosome in a Barr body, while Xa marks the active one
Torti-tabby ("torbie") with lots of red
Barr body formation is directly linked to the patchy coloration of tortoiseshells. Where the cat has an active black chromosome, the fur will be black pigmented. Where the cat has an active red chromosome, the fur will be red pigmented. Also, the chromosomal inactivation happens at varying stages of development. After it happens, all cells that come from the initial chromosonally inactivated cell will be of the same type. So, if a chromosome become inactive very early in development, it will lead to a large patch of fur that's the same color. Later inactivation leads to smaller patches. This is how tortoiseshell cats can have such variation in the size of their patches.

A tortoiseshell with fairly even color distribution
Believe it or not, looking for Barr bodies is one of the easiest ways to determine if an individual has a sex chromosomal abnormality. Women with no Barr bodies are likely to be XO, while those with more than one would be XXX, XXXX, or higher. Males with Barr bodies are likely XXY, and multiple Barr bodies would be XXXY or higher. Of course, this only works for those with unusual numbers of X chromosomes and another sort of test must be done for multiple Y's.

A calico cat
Calico cats are almost exactly like tortoiseshell cats, with the only difference being the addition of the gene for white markings. 

If you see a male tortoiseshell or calico cat, it's likely to have a chromosomal abnormality such as Klinefelters syndrome (XXY) or some sort of mutation. There have been more than a few male tortoiseshells that have been found to be either chimeras, which have the DNA of two separate individuals, or mosaics resulting from some sort of mutation.

Also an interesting feature of tortoiseshells is that they cannot really be cloned. Since their coloration is based on random chromosome inactivation, the offspring will never look the same as its parent. In fact, it's more likely that the clone will be solid black or red rather than tortoiseshell since whatever cell that is collected from the donor will have already undergone the inactivation. Indeed, the first ever cloned cat, though cloned from a calico tabby, ended up a simple, uni-colored, black-pigmented tabby.

Sources are Texas A&M, Memorial University, Kimball's Biology, University of Miami, Messy Beast, Cat Fanciers' Association, Berkleyio9, and Dr. Sophia Yin. Images are from Wikimedia Commons under creative Commons licenses: one, two, three, four, five, six.

Tuesday, September 25, 2012

Ebon, Ebon, Ebon

So, I haven't really felt like I've had anything interesting to say lately. I drafted a few posts, but they were dry and I hated them, so thus the lack of...anything. I also got angry with my camera because it's making it more difficult for me to upload pictures. That didn't help.

Anyway, I'm going to get back into the swing of things. Here's some recent stuff with Ebon. Forgive me if the images are slow to load. My old uploading method automatically compressed the images down nice and small, but now I would have to compress them manually. So, these are not compressed at all. Hopefully I can work out an easier way of doing this.

Ebom at the fountain in the big park downtown. The last time we were here, the fountain was decorated for Christmas
Ebon enjoying the water
Here, you can see where the spout is
And now for the coolest water fountain I've ever seen. It has three levels: one for adults, one for children, and one that's the perfect height for dogs! It's the only one like this in the park, with all of the others being the standard one- or two-level types. Even though there is only one, I'm glad they have it. The city's pretty dog friendly, and little touches like this make lives much easier for dog owners.

I do wonder, though, if this is kind of a leftover from when the park was even friendlier for dog owners. It used to allow provisional off-leash time, but there's now an ordinance that all dogs must be on lead at all times. I might have to take Ebon's long-line with me one of these days and make use of the huge green space at this park, while still obeying the laws.



After the park, we stopped at a nearby natural food market that's the sole supplier of certain products. Ebon got to drink out of my squeeze bottle while taking a little rest in the shade.

That's it for our park day, but I do still have a few things to share:

I'm skirting the leash laws at the condo by using Ebon's long-line to play fetch. It was actually made for me by my dad out of old clothesline and a couple of strong clasps. It serves its purpose. I wish it was longer, though, and didn't tangle as easily.
I also taught Ebon how to open and close his kennel door a while ago. He learned it super quickly, and now absolutely loves to tug on the toy I tied to the door. Earlier today, I asked him to go and open the door. He then, without any prompting, went inside and closed the door behind him. Then, when I tried to open the door, he kept closing it again.


I love this dog.